rs27388251 SNP Detail

Summary

• ID
  rs27388251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150630033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATACACT GAACGGAGCC
  TTTGACAGTT CTCACCACCC CAACCCCCAA AACTTCTCAG CTCTGTCTGC TGGACTGCTA
  ACTCTGTGCA ATTAAGCTGG CTTCAAACCC ACGGAAACCC ACCAGCCTCT GCCTCCAGAG
  TGCTGGGATT ATTAAGGCGT GTGCCAGCTC CACCAGGTCC CCCAGTCCTC CTTATTCTGT
  Y
  CCGTTTATGT TTCCAGGTAA TTGCTGTTCC TAAATACACA GGTATGCATA TTTGTATGCT
  GCACAATTTT GTGGCTTTTA TTTCATCCGA AACCATTTGT GGCTTCACTC ATAAACAGGG
  CTCTGGGTCA GTAATACATA CTGGTGCTTT TAAGCTTATG CAGGTATCAT ATTTTTACAC
  ATCCCCTGTT GCAAGAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568183	NES08919229	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		C	T	T	T	C	C	C	C	C
ss45348548	mCV24554244	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss147950609	ENSMUSSNP1953847	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388251					SNP	C	T	T	T	T	T	T	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568183	NES08919229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150630033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	741 bp distal
Gm30141	predicted gene, 30141	1419 bp upstream
Gm57834	predicted gene, 57834	506 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	1267 bp downstream
Rr567101	regulatory region 567101	1368 bp distal
Rr567102	regulatory region 567102	664 bp proximal
Tssr20709	transcription start site region 20709	1319 bp downstream
Tssr20710	transcription start site region 20710	1296 bp downstream