rs27388254 SNP Detail

Summary

• ID
  rs27388254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150629832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCCCTAC TCCGAGACTG
  ATGAGAAGAA AATCACTTGT AATGCCTGCC TGAAACAGGA GAGGGTCCGA AACTCAAAGA
  TGGAATCCTC GTGGGGAAGG CTGCCTTTGA GGTTTCCACC TTGACAAAAC TTGTTAGCAA
  GTTGCTTTAG AAGTTGTAGC ATTTTTTCTG TTTTGCAAAC CTTTATTCTT AGTAGGAAAA
  Y
  AAAATACACT GAACGGAGCC TTTGACAGTT CTCACCACCC CAACCCCCAA AACTTCTCAG
  CTCTGTCTGC TGGACTGCTA ACTCTGTGCA ATTAAGCTGG CTTCAAACCC ACGGAAACCC
  ACCAGCCTCT GCCTCCAGAG TGCTGGGATT ATTAAGGCGT GTGCCAGCTC CACCAGGTCC
  CCCAGTCCTC CTTATTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568186	NES08919338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388254					SNP	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568186	NES08919338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150629832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	540 bp distal
Gm30141	predicted gene, 30141	1218 bp upstream
Gm57834	predicted gene, 57834	707 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	1066 bp downstream
Rr567101	regulatory region 567101	1167 bp distal
Rr567102	regulatory region 567102	865 bp proximal
Tssr20709	transcription start site region 20709	1118 bp downstream
Tssr20710	transcription start site region 20710	1095 bp downstream