rs27388271 SNP Detail

Summary

• ID
  rs27388271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150628039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGGGCT GGCCTAAACC
  CTTTCAGAAC CTCAGCTTGC TTCCCTGCTC ACCAATGAAA TGTTTCTCCT TCTTCTCCTT
  GTGCATGGCT GACTTCTTTC TGGATGGAAT TTTTCTTTAA CAACCAGAAA GGTTGTGATT
  GATAGTAGCC TCTGCCCATC CTTGGAGAGA ATGCTGTATA CTTAATTTGC AGCAGATTTT
  Y
  TGTGTTTGTC ACTGCAGCCT AGACTGGCGA TTTGTATTTT GAGGAGTTCC ATGCAGTTTG
  TTCTCCAGAG CTGAAGTGGT GTCATGGAGG CACAAACATT GATATGACTT ATGAATTTTT
  AGTTTTTGCA CAAACAACGT TTTTTTCTTG CGTGTGTTTT CAGAACCACC TGTCAGCTTG
  GCGACGAGTC CCAGCAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568203	NES08919319	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388271					SNP	C	T	T	T	T	T	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568203	NES08919319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150628039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	330 bp proximal
Gm30141	predicted gene, 30141	within coordinates
Pygb	brain glycogen phosphorylase	677 bp upstream
Rr397385	regulatory region 397385	427 bp upstream
Rr567100	regulatory region 567100	1793 bp distal
Rr567101	regulatory region 567101	126 bp proximal
Tssr20709	transcription start site region 20709	621 bp upstream
Tssr20710	transcription start site region 20710	687 bp upstream