rs27388289 SNP Detail

Summary

• ID
  rs27388289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150626525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGGTTA TTTAACACTT
  GGCTGACCAG CATAGAGAAG CCGGCAGTAT TGCCTGGAAT TTGGGGAGCT TCAGTTTTCT
  CCACTTCTGA GTTAACAACT GTAGAGAGTA CAGATCGTCA GAGGAATAGG GTCAGTTCCC
  CTATTCCATG CCAAAGTAGC TGAACCTTCC CCACATATTA GGTATATAAT CTCAGTCAGA
  Y
  CAGAAAAGTC TTTGAACAAC TGTTTTGAAG CAGGTCAGCC AGTGTTGAGA TTACAGGCAT
  GGCTAGCTCT TTGGAAACCT GTAGTCTGTT CCCCTGGACT GTGGAAGTGT CATGAGGGCA
  CATACACTGA GAAGACTTCT GAACTGCCAA ATCACTCTCA AGGAGGTTCC ATTAATCAGA
  GTCCCCAGCC TCCAGCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568221	NES08919301	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388289					SNP	C	T	T	T	T	T	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568221	NES08919301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150626525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	1844 bp proximal
Gm30141	predicted gene, 30141	within coordinates
Rr397385	regulatory region 397385	1941 bp upstream
Rr567100	regulatory region 567100	279 bp distal
Rr567101	regulatory region 567101	1640 bp proximal