rs27388291 SNP Detail

Summary

• ID
  rs27388291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150626302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGTATT AATCAAGATG
  ACTCCCACGC TGGCTTTCAG ACCAATCTGA TGGTGGCATA CTCACAATTG AGGTTCCACC
  TCCCAGGTGA CTGTAGCTTT CACCAAGCTG GTAAAAATTA ACCAGAACAA TGAGGGAGGC
  CTTCCATGTC ACCAGGTCAC TCCAAATTCG GGTCTTCATT TAACCAGGTC CAGCCACTTA
  Y
  CTTCATTTCT TGAAAGGTCT GGTCTGTGGT TATTTAACAC TTGGCTGACC AGCATAGAGA
  AGCCGGCAGT ATTGCCTGGA ATTTGGGGAG CTTCAGTTTT CTCCACTTCT GAGTTAACAA
  CTGTAGAGAG TACAGATCGT CAGAGGAATA GGGTCAGTTC CCCTATTCCA TGCCAAAGTA
  GCTGAACCTT CCCCACATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568223	NES08919298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388291					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568223	NES08919298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150626302 () rs orientation: forward

Symbol	Name	Function Class
Gm30141	predicted gene, 30141	within coordinates
Rr567100	regulatory region 567100	56 bp distal
Rr567101	regulatory region 567101	1863 bp proximal