rs27388573 SNP Detail

Summary

• ID
  rs27388573
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150313398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACAATTT CTTTTTCTAT GCATCTTTTA TTCATCAAAA
  CAATGTCTAT TCCTAACCAC AAAACAACAA ATGGATATGA TTGATTAGAT TGTAGCACCC
  W
  CATTCTGTAT CAGCTGACAT AGAAGACTAC ATGAGGAAAG CCCCTATCAT TAATTCTGAG
  TGGTGGGAAA ATGTAGCTGT AATTTGGCAC AAATGTTTCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37569209	NES08913141	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388573					SNP	T	T	T	T	A	T	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37569209	NES08913141	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150313398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12405	CpG island 12405	1185 bp distal
Gm14127	predicted gene 14127	1313 bp upstream
Rr567041	regulatory region 567041	1169 bp distal
Zfp345	zinc finger protein 345	mRNA-UTR