rs27388575 SNP Detail

Summary

• ID
  rs27388575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150312006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTGAGG AAACTCTGAG
  CTGTCAGATA GTATTACTTT AGCACCACAT TTGGCAGCCA AAATCCCAGG AAGGCTCACT
  CCAGCTCCAA CCTCTAAGAC AGCTTTGCCT GGTAGAGATC TTCTGTGAAA CCACAGGTAG
  TGGGCCAGGA CTACAGCACA GGGCCAAACA TACATTCCAT ACTGGACATG CAGGACCTGC
  R
  GGACGCGGAC CTCCAGCACC GCCCGATCGC CTCCGGGACC TGGCTCCTCC CGGAACCGAA
  AGAGCTGGGT CCCGGCCATG AGGCCAGGCT CGCACGGAGG GGAGTCCAGG GACGCCGGGT
  CAGGAGGCAG TGCCCAAGGA GCGCGGGGCC GGACACTGTC CACAGCAAAC ACAGGAAGCC
  GGAGGCCGCA GCGGCCCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37569211	NES08913194	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27388575					SNP	G	G	G	G	G	G	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37569211	NES08913194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150312006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12405	CpG island 12405	within coordinates
Gm14127	predicted gene 14127	within coordinates
Rr567041	regulatory region 567041	within coordinates
Zfp345	zinc finger protein 345	905 bp downstream