rs27388576 SNP Detail

Summary

• ID
  rs27388576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150311910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGAAT GTCCTTTGAT
  ATGTGGCCCC ATGTTAGTCC TACAACTTAG ACCTGTGGCA GGTTATTCAT CTGGCAACTT
  TGCATGCAGA TATCCAGACA GTGAGGAAAC TCTGAGCTGT CAGATAGTAT TACTTTAGCA
  CCACATTTGG CAGCCAAAAT CCCAGGAAGG CTCACTCCAG CTCCAACCTC TAAGACAGCT
  Y
  TGCCTGGTAG AGATCTTCTG TGAAACCACA GGTAGTGGGC CAGGACTACA GCACAGGGCC
  AAACATACAT TCCATACTGG ACATGCAGGA CCTGCGGGAC GCGGACCTCC AGCACCGCCC
  GATCGCCTCC GGGACCTGGC TCCTCCCGGA ACCGAAAGAG CTGGGTCCCG GCCATGAGGC
  CAGGCTCGCA CGGAGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37569212	NES08913192	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27388576					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37569212	NES08913192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150311910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12405	CpG island 12405	84 bp proximal
Gm14127	predicted gene 14127	within coordinates
Rr567041	regulatory region 567041	68 bp proximal
Zfp345	zinc finger protein 345	1001 bp downstream