rs27388577 SNP Detail

Summary

• ID
  rs27388577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150311793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTGGTT TTTTAAGTGA
  GTTTTCTAAG ATACATCCAG CCAAGTTTGC TATAAATTAT ACTTACCTTC TGGTTCAAAG
  AACACATCAG ATCCAAGAAT GATGTCTTGT GGTGGCAAAG ACAGAATGTC CTTTGATATG
  TGGCCCCATG TTAGTCCTAC AACTTAGACC TGTGGCAGGT TATTCATCTG GCAACTTTGC
  M
  TGCAGATATC CAGACAGTGA GGAAACTCTG AGCTGTCAGA TAGTATTACT TTAGCACCAC
  ATTTGGCAGC CAAAATCCCA GGAAGGCTCA CTCCAGCTCC AACCTCTAAG ACAGCTTTGC
  CTGGTAGAGA TCTTCTGTGA AACCACAGGT AGTGGGCCAG GACTACAGCA CAGGGCCAAA
  CATACATTCC ATACTGGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37569213	NES08913191	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388577					SNP	A	A	A	A	A	A	C	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37569213	NES08913191	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150311793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12405	CpG island 12405	201 bp proximal
Gm14127	predicted gene 14127	within coordinates
Rr567041	regulatory region 567041	185 bp proximal
Zfp345	zinc finger protein 345	1118 bp downstream