rs27389203 SNP Detail

Summary

• ID
  rs27389203
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151054372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCTCCA CCTAGTGCAT
  GCCATTACAG TTGCTATGAG TGTAACAGTG CCACAACCAT GTTATGCCTG GAAGCCACTG
  TTGTACAGCA CCTAACCCTT CCTCTGCTCT ATTTCTTAAA AGTGTATGCA CTGTCACTAG
  TAATGTTTCC TTCCCGATGA AATTCCTGAA GACTTTATTT TGGGATTTAC CACCTTCATA
  S
  GGATAATTTA TCCATACTCT TAATCTGTAA ACTTTCCTAT TATTTCCCCT CTCATATGTA
  CAAAATTTGT GTGTGTTCCA TAGTAAATAC ACCAACACTT GGAAGCCAAA CAATGTGGTA
  AAGGCTGAGA TTTGTCAGTG TGATAAAATT GTAACTTTAT TCTTACTTAA CCCTTACTGG
  CTAGCTATGT GAGATATGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37566337	NES08910129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27389203					SNP	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37566337	NES08910129	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151054372 () rs orientation: forward

Symbol	Name	Function Class
Gm14149	predicted gene 14149	within coordinates
Gm52498	predicted gene, 52498	1988 bp downstream