rs27389685 SNP Detail

Summary

• ID
  rs27389685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103378246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATCAGCA GTACCAGATG
  GCTCCCTTGG ACACAGCTCT TCATCCACTG ACCAGAAGTG ATAAAATAGG CCATCTTTTC
  TTTTCCAAAG TATATTTACA AATGAAGCCT CCGGACTGAA AGGAAACAAA AACAAAAACA
  GAGTCCTCAA ATAAATAACC TACTGATGGA ACTCAAGGTC TTAGAAAAGC AAGAACATGA
  Y
  AAATCTAAAA GCGGTGGGTA AGTAAGAAAT ACTAGTCATC GGGGGAAGAA ATTAATATGA
  GAGAAATGAA AAGAACAATA TAGACTCAAT CAAAACAAGT TAGTTCTGAT GGGGCTGATG
  AGTAAAGGTG CTGGCTTTCC AACTATGTGA ACCTGATTAA CTGAGTTTGA TCCGTAGAGG
  CCATCTAAAA CTGGTAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37573104	NES09072220	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27389685					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573104	NES09072220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103378246 () rs orientation: forward

Symbol	Name	Function Class
Gm13996	predicted gene 13996	213 bp downstream
Gm75314	predicted gene, 75314	505 bp upstream
Rr561864	regulatory region 561864	516 bp distal
Rr561865	regulatory region 561865	579 bp distal
Rr561866	regulatory region 561866	534 bp distal
Rr561867	regulatory region 561867	356 bp distal