rs27389690 SNP Detail

Summary

• ID
  rs27389690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103377715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAC AAAACAAAAC
  AAAACAAAAC AAAAGAAAGA GCAGAGCATC CTAGCTACCC CACCAACCCA CCAGCCTTCT
  GGACTAGACA ACCTGAAGGG TTACCTTCTT TTCCATCATG CCATCTGGTG TGCAGCACCG
  CCTGGTGGCT GAGATCATCA AGTGATTCTA ACAGAAAGGG TTCCACCTGG TGGCCATGAC
  R
  TTCCTTCTGG CCAAGGAAGA ACATCTGAAG CTGTATGAAA CTTTGACCTG AGAGACTCCT
  TTCTTCAGTG CTGGTGAAGG ACATGAGCTC AGGGCCAGTG GAGCCATGGA CTAAGACAGC
  CTCCATGTGG AGAAGCCAGG CTAAGGGATG CTGGGGACAC CAGCCCAGTT GCTTCTAGGC
  AGGCTCTGCT TGAGGAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37573109	NES09072208	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27389690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573109	NES09072208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103377715 () rs orientation: forward

Symbol	Name	Function Class
Gm13996	predicted gene 13996	within coordinates
Gm75314	predicted gene, 75314	within coordinates
Rr561864	regulatory region 561864	within coordinates
Rr561865	regulatory region 561865	48 bp distal
Rr561866	regulatory region 561866	3 bp distal
Rr561867	regulatory region 561867	16 bp proximal