rs27389691 SNP Detail

Summary

• ID
  rs27389691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103377660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGGTCA GCCAGGGCCA
  CACAGAGAAA CCCTTTCTCA AAAACAAAAC AAAACAAAAC AAAACAAAAC AAAACAAAAC
  AAAACAAAAG AAAGAGCAGA GCATCCTAGC TACCCCACCA ACCCACCAGC CTTCTGGACT
  AGACAACCTG AAGGGTTACC TTCTTTTCCA TCATGCCATC TGGTGTGCAG CACCGCCTGG
  Y
  GGCTGAGATC ATCAAGTGAT TCTAACAGAA AGGGTTCCAC CTGGTGGCCA TGACGTTCCT
  TCTGGCCAAG GAAGAACATC TGAAGCTGTA TGAAACTTTG ACCTGAGAGA CTCCTTTCTT
  CAGTGCTGGT GAAGGACATG AGCTCAGGGC CAGTGGAGCC ATGGACTAAG ACAGCCTCCA
  TGTGGAGAAG CCAGGCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37573110	NES09072207	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27389691					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573110	NES09072207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103377660 () rs orientation: forward

Symbol	Name	Function Class
Gm13996	predicted gene 13996	within coordinates
Gm75314	predicted gene, 75314	within coordinates
Rr561864	regulatory region 561864	within coordinates
Rr561865	regulatory region 561865	within coordinates
Rr561866	regulatory region 561866	31 bp proximal
Rr561867	regulatory region 561867	71 bp proximal