rs27389693 SNP Detail

Summary

• ID
  rs27389693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103377180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGGAAA CTCTTTGTCT
  TAAAAAAAAA CAAACAAACA AACAAAAAAA AAACTCAATG GGCTGCCAAG TGGCTCAGTG
  GGTAAAAGTA CTTTCTATAG GAGCCTAATG AGCTGAGTTT GATGCCCAGA ACACATGGGA
  AGGTAGAAGG AGAATAGCGA CCCTTCACAC ACCATGAAGC ACATACCTAC ATGAACACAT
  Y
  ACACAAATAC ACTCGCACAA ACAACAATAG ATAGATAGAT AGATAGATAG ATAGGATAAA
  CAAAACAAAA TTCCTATAGT CAAAAGAAAA TGAAAGTAGA ACTTATCAGA ACTTTTGGGA
  TACAGCTAAG GCATTTCTGA GAGAAGAAAG TTTATGACTA TATGTTTACA TTTGAAAATC
  AAAGAGGCAC ACATGTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37573112	NES09072267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27389693					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573112	NES09072267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103377180 () rs orientation: forward

Symbol	Name	Function Class
Gm13996	predicted gene 13996	424 bp upstream
Gm75314	predicted gene, 75314	within coordinates
Rr561864	regulatory region 561864	364 bp proximal
Rr561865	regulatory region 561865	449 bp proximal
Rr561866	regulatory region 561866	511 bp proximal
Rr561867	regulatory region 561867	551 bp proximal