rs27389694 SNP Detail

Summary

• ID
  rs27389694
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103376343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAAGTG GGATATACAT
  TCTTCTCAGC ATCTCACAGA ATCCTTTCTA AAATAGATTA CCTTCTACGT CACAAAACAA
  TGCTTAACAA TAGAAAAGTG TGAGGACTGG AGGAAGCCCT GAGTGAGTTA AGTCCTGAGT
  GAATGTGTAC TGTGGATATA AGCTTGACGA TGTCAAAAAC CAATGCCTTG GTCCTGTGGG
  M
  ATATCAGGGC CTTCTCTGGG TGAGGTTTGC AGGGATGGAA AAGTCCAGAG TGAATGTCGA
  TAGTGTGTGC AGAAAATATC CACCATAGCT TTCTCCATTG CTAAGTAAAC ATAGCTTACT
  GCTCCCCTAC ACAGCCTGTG CCTACTGAGA TTAGTCAAAT TTGCATCCTT GTCCAGCTAT
  ATGCAATAAC CCTTGCCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37573113	NES09072299	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27389694					SNP	C	C	C	C	C	C	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37573113	NES09072299	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103376343 () rs orientation: forward

Symbol	Name	Function Class
Gm13996	predicted gene 13996	1261 bp upstream
Gm75314	predicted gene, 75314	within coordinates
Rr561864	regulatory region 561864	1201 bp proximal
Rr561865	regulatory region 561865	1286 bp proximal
Rr561866	regulatory region 561866	1348 bp proximal
Rr561867	regulatory region 561867	1388 bp proximal