rs27389899 SNP Detail

Summary

• ID
  rs27389899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103134567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCCC TGAGCTAAGG
  GTGCACAGGG AGTTTCCGAT TCTTGCTTCA CTGGGTCCCA CATGTTTCTC CACCTGCACA
  GGTGAGCGAC TACCCTGGCC AGGAAAAATA CAATCCCCTA ACCATTAACT TTCCCTTCTG
  GGTCTTCCTG GACACCAGCC TTCTATGAGC AAAGCATCCC CTGGCAGGTT TGTTGAACTC
  R
  GCGAGGCTCT TCTCCCTTTG TCGGAAGACA GGAAGGAGTT TGGCAAAAAG ATTTTGTGAT
  CACAACTCAG TTCCTTCTGT GGCAAAAAAA AAAAAAAAAA AAAAAAAAAA AAGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTATGCAA AAGTTCATGG AAAAAACAAA ACCCAAATGG
  TTGTTGTGCT GCTGACTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss37574041	NES09062776	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs27389899					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37574041	NES09062776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103134567 () rs orientation: forward

Symbol	Name	Function Class
Ehf	ets homologous factor	947 bp upstream
Gm74896	predicted gene, 74896	within coordinates
Rr45517	regulatory region 45517	1633 bp proximal
Rr55313	regulatory region 55313	966 bp distal
Tssr25460	transcription start site region 25460	1051 bp upstream
Tssr25461	transcription start site region 25461	1012 bp upstream