rs27389901 SNP Detail

Summary

• ID
  rs27389901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103134007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTCAGC TTAGAGGCAG
  TTTCAGGTGA AAAGTATCTC GCTCCCCAAA AGATGCTCTG AGGAAGGGGG AATAGAAAAG
  CCAAGTCCAA GTCCCTGTCA AGCAAATGAA GGAAGAGGGC CTGAGGTGCT CTTAAACATC
  CGGCTCATTT TCTAACCCGT ATTTAGTCCT CTGCTATGTC ATCAAGATCT TTGCCCTGGC
  Y
  GTGCAGGTAC CCGGCGTGGA AGGAGCTTCT AGTTTCTAGT CCATTCTGTC TGTCTCTGGG
  CATCATGACC AACTCTTTGT AGTGACTCTT GACAATTTCA GAGGCTTTTC CCCAGTCCCA
  GGTAAGCACC TCAGAGGATC GGACAGCCCT GGAAGGGAGG GGCCACTGTG AAATGTCTTT
  GGGCAACAAT CCTCAGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	PWD/PhJ
ss37574043	NES09062774	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	PWD/PhJ
rs27389901					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37574043	NES09062774	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103134007 () rs orientation: forward

Symbol	Name	Function Class
Ehf	ets homologous factor	387 bp upstream
Gm74896	predicted gene, 74896	within coordinates
Rr55313	regulatory region 55313	406 bp distal
Tssr25460	transcription start site region 25460	491 bp upstream
Tssr25461	transcription start site region 25461	452 bp upstream