rs27389902 SNP Detail

Summary

• ID
  rs27389902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103133705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTAAGTC ACTTCCCCCT CCTCTGATTG GCTGCCCGGC
  CCTTTAAAAA AATAAAATAA AGGATTACAA ACATTGGCTC ATTTGCATTT GGCCAACTCA
  S
  ACGTTAGTGT TCAAACAAAA CAGGTCTAAC CAGGTTATGC CTGTGTCTCA AGAACAGAGG
  CGACCTGTTA ATGGATGAGG AATTGATTTG GTCGTGACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
ss37574044	NES09062773	PERLEGEN	MM_PANEL2	f	SNP					G	C
ss45304954	mCV22830079	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss147131914	ENSMUSSNP6452536	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
rs27389902					SNP	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37574044	NES09062773	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103133705 () rs orientation: forward

Symbol	Name	Function Class
Ehf	ets homologous factor	85 bp upstream
Gm74896	predicted gene, 74896	70 bp upstream
Rr561818	regulatory region 561818	205 bp distal
Rr561819	regulatory region 561819	within coordinates
Rr561820	regulatory region 561820	81 bp proximal
Tssr25460	transcription start site region 25460	189 bp upstream
Tssr25461	transcription start site region 25461	150 bp upstream