rs27394552 SNP Detail

Summary

• ID
  rs27394552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:95063272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTAATC AAGGCAGCCA
  CAAAGCGACC CTGGAGTTTA TTAGCAGAAA ACAGGTTGTT TCTTCCCCAG AGACAGGCTT
  TTTCTGCCAC TTCAGATGTG AGGAGTACCC TTTCCTTGAG TTTTTCTGGT TGAGAGACAC
  ACCCAAGCCA GCCGTTCATC TTCCAGCCTT CCTGAGGCCC TCCTTCATCA GCCCTTTCTC
  R
  GATCTCATTG CCTTTATCTG CTCCCAGGTC TCCAGTCCTT TGATTAGAAG GTTGACAGGC
  ACAAAACAGA GAGGCAAGAT AACCGCCTCA ACTACGCTGA ATGCTCAACA GACTGATCAT
  TTATCAAAGC AGTTTTGGAT CTGTTGCCTG GACGTGGATA TTTCAAGGTG TTTGGTTTTT
  TGTTTTGTTT TTCTCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37593173	NES09093939	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	G	G	A	G	G	G	G	G
ss45235891	mCV24356593	ABI	CRAMUS_MOUSE	f	SNP	A	G						G
ss146963679	ENSMUSSNP1890172	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27394552					SNP	A	G	G	G	A	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37593173	NES09093939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:95063272 () rs orientation: forward

Symbol	Name	Function Class
Rr561409	regulatory region 561409	within coordinates
Rr561410	regulatory region 561410	715 bp distal