rs27394555 SNP Detail

Summary

• ID
  rs27394555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:95062123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTGCACT GGTACAGTAA
  GAAAGAAAGG AAGCTCAAAA AGGTCAACTG ACCTGTTCAA GGTCACACAG AGAATTCTTG
  CAAACCCAAG GGCCGTCTCT GCTGATAAAC TGGCTCTGTC ATATTCAGAG AATAATAGTC
  AGGTTCACAA AAGCTGGGAG GCATAATTAT TTTCATCAAT AAGACAAATA TGTCAGGCTC
  R
  TTTGTAGTTG GGGAAATTAG GAGAGGTGTA TTTTCTTGAG TGATTTTTTT TATTATTCTC
  ATCTATACCA CTAGGGTGTT GTTAATATGC ACTACAAGCT TCGTGTTCAT TCGACATTAT
  CATATTTGTA AAGCAGAGAT GCACTGTAGA GACGTTGTGC AGAATAGAGA CTCCATTCCA
  ATCCCTGGTA TTCTAGACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37593176	NES09093936	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G	G	G	G	G	G
ss45245330	mCV24356407	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss146963669	ENSMUSSNP682369	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27394555					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37593176	NES09093936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:95062123 () rs orientation: forward

Symbol	Name	Function Class
Rr561409	regulatory region 561409	157 bp proximal
Rr561410	regulatory region 561410	413 bp proximal