rs27394563 SNP Detail

Summary

• ID
  rs27394563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:95060751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATGGAGC CTATTTGGGT CACCTCTGCT TTCTCCCCTT
  GCTCCTCGTT TTTCTTCTCC CTCCCTTTTG TTGTCCTCCT TTTGGGGCTT GAGAGGGAGT
  R
  ACCCATCCAC ACATACTTGC AGAGTAGGCA GACAGATGCA GTGGTCTATG ACAACGTCTC
  TCTGAAGAAC AGAATGCAGC CCTTACAGTG GGTACCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37593184	NES09093928	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		G	G	A	G		G	G	G	G		G
ss45369705	mCV24356395	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		G
ss146963659	ENSMUSSNP2521077	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss320399980	CHEV_2_95070563	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27394563					SNP	G	G	G	A	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37593184	NES09093928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:95060751 () rs orientation: forward

Symbol	Name	Function Class
Rr561409	regulatory region 561409	1529 bp proximal
Rr561410	regulatory region 561410	1785 bp proximal