rs27397202 SNP Detail

Summary

• ID
  rs27397202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94209656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCACACG AGTGCGCACA
  CACACAGACA CGCATGCACA CACAAATATA AGCTAAAAGA AAAAAATGGA TTAAAAAATA
  TTTCAGCTAG ATGACACTGA AACCAAAGGA GAATTTAATG AGCGCTGACC CTGTCTAGAA
  AGACGAAGAT TCTGGAATGT CTTTAGTTAC ACCTCTTTCT CTGAATGGTA CCCATGTGAA
  R
  GATTCATTTG CTCTGTTATT CTCTTAAAAT ATTATTTTGA TTATATATTG ATCCAAAAAA
  CCCCTCAATT CTATGCATAC ATGGTTTTAT GCTGATGTAC TACTCTAAGT CGCTAAACTT
  AACACTTTTT TTTTGTTTGT TTGTTTTTTG AGACAGGGTT TCTCTGTATA GCTCTGGCTG
  TCCTGGAACT CACATTGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595133	NES09086607	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397202					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595133	NES09086607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94209656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373553	regulatory region 373553			852 bp downstream
Rr561371	regulatory region 561371			420 bp distal
Ttc17	tetratricopeptide repeat domain 17			Intron
				Noncoding-Transcript-Variant