rs27397203 SNP Detail

Summary

• ID
  rs27397203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94209631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCGCGC GCACAGACAC
  ACGCACATGC ACACGAGTGC GCACACACAC AGACACGCAT GCACACACAA ATATAAGCTA
  AAAGAAAAAA ATGGATTAAA AAATATTTCA GCTAGATGAC ACTGAAACCA AAGGAGAATT
  TAATGAGCGC TGACCCTGTC TAGAAAGACG AAGATTCTGG AATGTCTTTA GTTACACCTC
  Y
  TTCTCTGAAT GGTACCCATG TGAAAGATTC ATTTGCTCTG TTATTCTCTT AAAATATTAT
  TTTGATTATA TATTGATCCA AAAAACCCCT CAATTCTATG CATACATGGT TTTATGCTGA
  TGTACTACTC TAAGTCGCTA AACTTAACAC TTTTTTTTTG TTTGTTTGTT TTTTGAGACA
  GGGTTTCTCT GTATAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595134	NES09086605	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397203					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595134	NES09086605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94209631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373553	regulatory region 373553			827 bp downstream
Rr561371	regulatory region 561371			395 bp distal
Ttc17	tetratricopeptide repeat domain 17			Intron
				Noncoding-Transcript-Variant