rs27397209 SNP Detail

Summary

• ID
  rs27397209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94208581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTAGTA CAGTCAGGTT
  GCTCTGGGTC TGGAGGGACA GGAGATTCTG TGTCTATGAA ATCCTCAGGC CTAAAATCAA
  GAGGCAGCAG GTGAATGACA GAGGTAAAAA CAGCGCTTTG AGAGACAGCT AACTTTCTCA
  TGCTCTCCCT GCGTCACAAC AGTACATAGC CAACACTTGT GGCTTTCCAC ACAACTGCCA
  K
  AAGAAGTCAA ATATTTAAGG AATTCAAATT AAAAGAGATA AATGAAGAAT CAGAAAATAA
  TAGGAGCCAA GATGGTAGTC TTTCAAAGAC TGCTAAATAA CTGTTAAATT CTTTCTAGAA
  ATGTCACTCA ATGCCCTCCC ATGCTCTGAG TAGCTACGGA TCTTAAGAAC TTTTTGTAGT
  ATGATAGATA AAACTGTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595140	NES09086629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397209					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595140	NES09086629	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94208581 () rs orientation: forward

Symbol	Name	Function Class
Rr373553	regulatory region 373553	within coordinates
Rr561371	regulatory region 561371	634 bp proximal
Ttc17	tetratricopeptide repeat domain 17	Intron