rs27397210 SNP Detail

Summary

• ID
  rs27397210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94207908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTCTACT AATTGTTTTT
  TTTAAATTAG TTTAAATACA TCTTTTCAGT ATCTTTTCCT GGTAAAGGGA ATGGCTCTAC
  CCATGCCTCC TTCCTATTGA GTGCTATACT CTGTACCAAT GTAATCACAT AGCTCTGCAT
  CTTCCTTTAT GGGGACAAGC AAACAACAAG CACCCTGAGA GGACCACGTG CCTGGGCACG
  Y
  AGAACATCCT AGCTCAGCGA GCTGCTGGGT GACTCACCTT CTGTAGGCCT TCGTGAATGA
  GATGACCTAT GTCGTCGATA CTCCTTCCTA AGCGTTTAGA CAAATATGTG AAGATTGGAT
  CTTCTTTAGG TAAGAGAGGG GCAGAGAGAT TAACTCTCTC TTGTACACCC TAAAGGAGGA
  GGGAATTTCA AAAACAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37595141	NES09086628	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27397210					SNP	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595141	NES09086628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94207908 () rs orientation: forward

Symbol	Name	Function Class
Rr373553	regulatory region 373553	within coordinates
Rr561371	regulatory region 561371	1307 bp proximal
Ttc17	tetratricopeptide repeat domain 17	Intron