rs27397212 SNP Detail

Summary

• ID
  rs27397212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94207689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGCTGG TGGGTTTAGG
  AAAATCTCCC AACTCAGCCT CAGGGTAGCC GAGACTACAG GCACACACTA CCAGGTAGAA
  ATTCTTGTGA GAAAATTACA GATGAATACA GTGGTAAGTG TCTAGGGAAA AGAACAGCTG
  TAATGTGCAC TGGATGCAGA TGCATCCACA GTTAGCTTTC TTACAGATGT AACTGATAGA
  R
  CCTAGTTTAT ACCTCCATTA CTTCTACTAA TTGTTTTTTT TAAATTAGTT TAAATACATC
  TTTTCAGTAT CTTTTCCTGG TAAAGGGAAT GGCTCTACCC ATGCCTCCTT CCTATTGAGT
  GCTATACTCT GTACCAATGT AATCACATAG CTCTGCATCT TCCTTTATGG GGACAAGCAA
  ACAACAAGCA CCCTGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37595143	NES09086626	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27397212					SNP	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595143	NES09086626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94207689 () rs orientation: forward

Symbol	Name	Function Class
Rr373553	regulatory region 373553	47 bp upstream
Rr561371	regulatory region 561371	1526 bp proximal
Ttc17	tetratricopeptide repeat domain 17	Intron