rs27397447 SNP Detail

Summary

• ID
  rs27397447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93034886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGGTG GGCTGAGTGT
  CTTCAGGCCA AGGCCTACTG GATGCCCCGG AAGAGGCACA TGGCAAAGAC CATGAGGAAG
  AGCTGCAGAG AAAGGGAGAA GATGATCTGG AGTCAGACTG GGTGCACGTC GAGGGGCTGC
  CCAGCACACC TCCTGAGGGG AATCGTGATT GTGACACTAC CCGGGGCAAG CATCTGCTCG
  Y
  CACTTGGGTA AAAAACAGGC GTTGGAAAGC AAGTCATCTG TTTAAACAGC TCAAATCTGT
  CTTTTTTGGG TTGGCAGAGA CTTTAAGCAA AGCACAACCC TTCTTGGGCA CCTGAGTGTG
  TACCGAGAGC TTACCATGTA AAGTAGGTTT CCAATGCTGT TAGCAGCAGC CTTTCTAACC
  AGCAGGAAGT GAGGCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600076	NES09091637	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	T	C	C	C	C	C	C	C	C
ss45246862	mCV23016576	ABI	CRAMUS_MOUSE	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397447					SNP	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600076	NES09091637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93034886 () rs orientation: forward

Symbol	Name	Function Class
Rr561120	regulatory region 561120	153 bp distal
Rr561121	regulatory region 561121	590 bp distal
Tspan18	tetraspanin 18	Intron
Tssr25280	transcription start site region 25280	1224 bp upstream
Tssr25281	transcription start site region 25281	1208 bp upstream
Tssr25282	transcription start site region 25282	1138 bp upstream
Tssr25283	transcription start site region 25283	1085 bp upstream
Tssr25284	transcription start site region 25284	868 bp upstream