rs27397449 SNP Detail

Summary

• ID
  rs27397449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93034372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATGCAC ATGCTGTGTG
  ACTGGACGGA AATGAAAGGG CCACCTTCTG ATCCAGTGTC CACACACAGC CACCCTCAGC
  CAGCGGGAGC AGGGACCGCT TCGCTCTCCA GCAGATGGTG CTGCAGAGTC TGTCCTTGTG
  TTGTGAAAAG CCGGCTCCTT GGGGCCTGAG GACCGGGCTC CTCCTCCAGG ATGTGTTTCT
  R
  CCTCCTGGTT GCTCTGATCC TGGAAATGCT AAGAGAGGTG ATCCGGGCCA AGGGACACTC
  CAGTCTGACA GGGCCAAGGG GCTCTGAGGC TGATGAACCT TTGGTCTCAG GAACAGCTGG
  TCCCAGGCCA GCCCTAGGTC CTTGTAGAGC CCATGCCCCT TGCTTTAGAG CCTAGGTGAG
  GCCCCTTCAT GTCTGTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600078	NES09091634	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	A	A	A	A
ss146939822	ENSMUSSNP2927537	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397449					SNP	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600078	NES09091634	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93034372 () rs orientation: forward

Symbol	Name	Function Class
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	76 bp distal
Tspan18	tetraspanin 18	mRNA-UTR
Tssr25280	transcription start site region 25280	710 bp upstream
Tssr25281	transcription start site region 25281	694 bp upstream
Tssr25282	transcription start site region 25282	624 bp upstream
Tssr25283	transcription start site region 25283	571 bp upstream
Tssr25284	transcription start site region 25284	354 bp upstream