rs27397452 SNP Detail

Summary

• ID
  rs27397452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93034097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTCTTG GCAGGGACCT
  TGAAGAACAC ATTCAAGCCT CAGCTCTGGG TAGAAAGAGA GAAATGAACA ATACTGGGGT
  GTCTTCCACC TGGGAGAACA GGGGTGGGGC ATGGCCCACG GGGACAGGTG ATGTATCACA
  GTTGGATCTC TGACAGAGGT ACAAGCAGGG CAGAGTGGAC ACAGTACGGA CTGTAGAGCT
  S
  GATGCAGGCA GTTCCTGGCC AGTTTACATC GGGGTGGAGT CCTGGCTGGA GCGACAGCAG
  CCTGGAGATG ACCTTGTCAT GCACATGCTG TGTGACTGGA CGGAAATGAA AGGGCCACCT
  TCTGATCCAG TGTCCACACA CAGCCACCCT CAGCCAGCGG GAGCAGGGAC CGCTTCGCTC
  TCCAGCAGAT GGTGCTGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600081	NES09091625	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397452					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600081	NES09091625	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93034097 () rs orientation: forward

Symbol	Name	Function Class
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	178 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	1993 bp downstream
Tspan18	tetraspanin 18	mRNA-UTR
Tssr25280	transcription start site region 25280	435 bp upstream
Tssr25281	transcription start site region 25281	419 bp upstream
Tssr25282	transcription start site region 25282	349 bp upstream
Tssr25283	transcription start site region 25283	296 bp upstream
Tssr25284	transcription start site region 25284	79 bp upstream