rs27397453 SNP Detail

Summary

• ID
  rs27397453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93032101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCCCCA CTCTGAGTCT
  GGGCTCAGAG TGCCCTGACT GCTCTCCCCC ACCCCATCCC CAGCTCCTCT TGTCATGCTT
  CTGCCTGGCC CCCAAGACTG CCTCTGTCAT GGTCACTATT TATTCTTGGT CCCTTTTTCT
  TTTTGTAAGA AACAGTCACA AGAAAACAAC AACAACAACA AAAAACAACC AATGAGAAAC
  R
  ATCTGCGTGG TGTCCTGTTT TATATTACAA AATTTCTCTT AATATAGAAT ATAAAAAGGG
  GAGACTTGGG AGATACAATG ATAAATTAGC TCTGTTTCCT ACTGCAAGGG ACATTTACAA
  ATTCCAAAAT AGACTTTAGC ATATGACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600082	NES09091752	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397453					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600082	NES09091752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93032101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561119	regulatory region 561119			474 bp distal
Rr561120	regulatory region 561120			315 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			mRNA-UTR
				Noncoding-Transcript-Variant
Tspan18	tetraspanin 18			4 bp downstream
Tssr18986	transcription start site region 18986			1917 bp downstream
Tssr18987	transcription start site region 18987			1472 bp downstream
Tssr18988	transcription start site region 18988			1449 bp downstream
Tssr18989	transcription start site region 18989			141 bp downstream
Tssr25280	transcription start site region 25280			1533 bp downstream
Tssr25281	transcription start site region 25281			1562 bp downstream
Tssr25282	transcription start site region 25282			1581 bp downstream
Tssr25283	transcription start site region 25283			1683 bp downstream
Tssr25284	transcription start site region 25284			1898 bp downstream