rs27397454 SNP Detail

Summary

• ID
  rs27397454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93031725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT ACAGTCCCAA GGGAGGTAGT
  Y
  GTAGAAATGG AAGACGCCAG CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600083	NES09091751	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T		C	C	T	C	C	C	C	C	C
ss45292284	mCV23016583	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss146939811	ENSMUSSNP5463725	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397454					SNP	C	C	T	T	C	C	T	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600083	NES09091751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93031725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561118	regulatory region 561118			1753 bp distal
Rr561119	regulatory region 561119			98 bp distal
Rr561120	regulatory region 561120			691 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			mRNA-UTR
				Noncoding-Transcript-Variant
Tspan18	tetraspanin 18			380 bp downstream
Tssr18986	transcription start site region 18986			1541 bp downstream
Tssr18987	transcription start site region 18987			1096 bp downstream
Tssr18988	transcription start site region 18988			1073 bp downstream
Tssr18989	transcription start site region 18989			197 bp upstream
Tssr25280	transcription start site region 25280			1909 bp downstream
Tssr25281	transcription start site region 25281			1938 bp downstream
Tssr25282	transcription start site region 25282			1957 bp downstream