rs27397456 SNP Detail

Summary

• ID
  rs27397456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93031412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCTTG GCCCTAGCTC
  CCAGCACCTC CCTACCCTTC AGCAGCAAGC ACACTAAGAG ATTTGGCCCG AGGCTTCTCC
  CTTCTGCAAG GGGGTGGTCC CCTATACCCG AGGAATCTTT CTCTAGGGCA CCTGGGCTCA
  CAGCCTCCCT GGGCTCGGTT GTTCCTGCTG CCAAGTGCTC TGTGACCATG GCCTTTGCCT
  R
  GTGGAGGGAA CTCAGTGGAG GATGTGCCCA GCAGTGGCCG GGGCTGCTTC TGTAACCAAG
  GTCTGGCAGA GTAGCGATTC CCTGCGTGTT CAGGAAGGGC CCATTGTGTA TACCTGCCTC
  TTGTCACTGG CTTGGTGCCA GTCCCTCAGT CCCACCTCTT TACTCGGACC ATGGACCCTG
  CCACTGCCAG CTCTTAGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600085	NES09091749	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397456					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600085	NES09091749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93031412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561118	regulatory region 561118			1440 bp distal
Rr561119	regulatory region 561119			within coordinates
Rr561120	regulatory region 561120			1004 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			mRNA-UTR
				Noncoding-Transcript-Variant
Tspan18	tetraspanin 18			693 bp downstream
Tssr18986	transcription start site region 18986			1228 bp downstream
Tssr18987	transcription start site region 18987			783 bp downstream
Tssr18988	transcription start site region 18988			760 bp downstream
Tssr18989	transcription start site region 18989			510 bp upstream