rs27397865 SNP Detail

Summary

• ID
  rs27397865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93643482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATATTCAC AACGCATTAT
  GAGAAATGAA GCGTCTATAC ATTATGATCA CATATTGCCA TTCCTGGCCA CCAAAAAAAA
  AAAAATGTTT ATACTATACA CACCTAGCAA TTTTATACAT TAAAAAAAGA TTTAATAAGC
  TCATTTAAAC AGTAATAGTT GTTACCTCTT AGAAATAGAG TATGTAACAA ATCTTACATT
  K
  CTTTTGCTGA GTAAACAGGA ATGACCCCAG AGCATGGAAT GGAGGATTTT AATCTAAAAG
  GAGACGTACA GAAAAGCCTT CCTTAGCTCT AAACTCCATG AAGCCCAGGC TGTGGCACAG
  CACAGGATGG CAGACCCCAG CTGGCGCTAA CCGCACAGAC CTCCGGCTAC TTCAGTCACT
  TACAAACGTG TGAGACAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37597190	NES09092906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27397865					SNP	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597190	NES09092906	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93643482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11950	CpG island 11950			333 bp proximal
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561284	regulatory region 561284			1058 bp distal
Rr561285	regulatory region 561285			240 bp proximal
Rr561286	regulatory region 561286			410 bp proximal