rs27397868 SNP Detail

Summary

• ID
  rs27397868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93641109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGAAGTT AGCAGATGCA
  TGAGAGGGCA CAAATGAGTG ACTCGGAGGC AGGGGCATGA CTGGTGGCCA GCTCTCCCCA
  CCTTCTGCTT TACCAGGAGG AACAAAACAA GGGAGGGGAG TGTGGGGATG AAAGGTTTCG
  GTGAAGAAGG GAGGAGGGGA GGAGCCAGGC CTCACGGACG GGCTTGGTCC CTTACACATC
  Y
  GCCTGTAGCA GCTTGTGTCC TCATGCTAAC TATGGTACCC AAAGACCTGC TTGCAGTGTC
  CCCACACCCA GGCTAAAGGA AGCCTGCCAC CAGTTGGCTC TGATTGGGAA ATAAAGCTGC
  CAACGGCCAC TGGCTGAGCA GAGACAGAGG CAGGACCTTT AGGATTCCCA GACAAGAAAT
  GCAGGATAGG GAGAAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37597193	NES09092974	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	T	T	T	T	C		T	T	C	T		T
ss146948880	ENSMUSSNP2278049	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320397090	CHEV_2_93650921	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27397868					SNP	C	C	C	T	T	C	T	T	T	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597193	NES09092974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93641109 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			514 bp distal
Rr561282	regulatory region 561282			634 bp distal
Rr561283	regulatory region 561283			589 bp distal
Rr561284	regulatory region 561284			1294 bp proximal