rs27397870 SNP Detail

Summary

• ID
  rs27397870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93640940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGCACC AACTAACAAG
  CCTGTGGGAA ACATGAATCT GCTCACACAC TTGTAACACT CCTGTAACCT GAACACTGTC
  CTGAGCTGGA GCCAAACTCT CTGCTTCCCT CAACGCTGTC AGCCAAACAC TAAAAGACGT
  GACGTGCCCA GCACCTCATT CTGGAACTTT CCGGAAGTTA GCAGATGCAT GAGAGGGCAC
  R
  AATGAGTGAC TCGGAGGCAG GGGCATGACT GGTGGCCAGC TCTCCCCACC TTCTGCTTTA
  CCAGGAGGAA CAAAACAAGG GAGGGGAGTG TGGGGATGAA AGGTTTCGGT GAAGAAGGGA
  GGAGGGGAGG AGCCAGGCCT CACGGACGGG CTTGGTCCCT TACACATCTG CCTGTAGCAG
  CTTGTGTCCT CATGCTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37597195	NES09092972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397870					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597195	NES09092972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93640940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			345 bp distal
Rr561282	regulatory region 561282			465 bp distal
Rr561283	regulatory region 561283			420 bp distal
Rr561284	regulatory region 561284			1463 bp proximal