rs27397873 SNP Detail

Summary

• ID
  rs27397873
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93640620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGATAA CTGCTGCTGC
  AGATGTGTGT GGGCACACTG CCCTCTGTCG GCCACAGGGC TCTCCATCCC TGTGTGGCCA
  CACTGCCCTC TGTTGCCCAC AGGGCTCTCT ACATTATCAT CTATCTTCTA GTAATCATCC
  TATTGCCAGA CAGAAACTCA AAGCTAACTT AAGATATCCA CTAGAAACAT AGACGGTTCA
  K
  ACCAGCCATC TGGGCAGACA CAGGACACTG TACATTTCCA CAGATGATGC TATTAGCCTC
  TGAGAAGCTA ACCATAGCTA GACTTGGGAA GTAAACTCTG TTAGTAACAC TGATCCCAAA
  TTCAGCACCA ACTAACAAGC CTGTGGGAAA CATGAATCTG CTCACACACT TGTAACACTC
  CTGTAACCTG AACACTGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37597198	NES09092969	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397873					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597198	NES09092969	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93640620 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			25 bp distal
Rr561282	regulatory region 561282			145 bp distal
Rr561283	regulatory region 561283			100 bp distal
Rr561284	regulatory region 561284			1783 bp proximal