rs27397874 SNP Detail

Summary

• ID
  rs27397874
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93640446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTCCTTA CAAATATCTG CTTTTATCTA GGTGTCTATA
  AAAGCAGCTT GGTCAGCAGG CCAGCCAGGG ACCACCTGGG ATAACTGCTG CTGCAGATGT
  K
  TGTGGGCACA CTGCCCTCTG TCGGCCACAG GGCTCTCCAT CCCTGTGTGG CCACACTGCC
  CTCTGTTGCC CACAGGGCTC TCTACATTAT CATCTATCTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37597199	NES09092968	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27397874					SNP	T	T	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597199	NES09092968	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93640446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			within coordinates
Rr561282	regulatory region 561282			8 bp proximal
Rr561283	regulatory region 561283			53 bp proximal
Rr561284	regulatory region 561284			1957 bp proximal