rs27397875 SNP Detail

Summary

• ID
  rs27397875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93640410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGGACC TTGGATCTAC
  ATACACACAA GCCATTTCAT TTCAAAGCCA GTGGGAATGA TCATGCCCTT AATGTTTACA
  TAATGCTAGT TTTCTCTGTT CTACACCCTT GGAATTTGAT GATCCTTCCT TTGCCCATAT
  TCCTTACAAA TATCTGCTTT TATCTAGGTG TCTATAAAAG CAGCTTGGTC AGCAGGCCAG
  Y
  CAGGGACCAC CTGGGATAAC TGCTGCTGCA GATGTGTGTG GGCACACTGC CCTCTGTCGG
  CCACAGGGCT CTCCATCCCT GTGTGGCCAC ACTGCCCTCT GTTGCCCACA GGGCTCTCTA
  CATTATCATC TATCTTCTAG TAATCATCCT ATTGCCAGAC AGAAACTCAA AGCTAACTTA
  AGATATCCAC TAGAAACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37597200	NES09092967	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27397875					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597200	NES09092967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93640410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			within coordinates
Rr561282	regulatory region 561282			44 bp proximal
Rr561283	regulatory region 561283			89 bp proximal
Rr561284	regulatory region 561284			1993 bp proximal