rs27398268 SNP Detail

Summary

• ID
  rs27398268
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102830372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTATCT GTGTGTGTCT
  GTGTATCTGT GTGTGTGTAT CTGTGTATCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC
  ATGTAGACAC TTTTCCACTT TTCAGGCATT GCTTTTCTCC TTCCACAATG TGGGTTCGGA
  GATCACAAGC ACCATTATCC GCTGAGCCAC TTGGACAGCC CAGAAGAGAT ACTTGGTGGA
  M
  CGCCTTAAAG AAAACAAGAT ACATTCTGGG GCTGGGGAGC TGTCCCAAGC CTGGGAACGA
  ACTCACCAGT AAGGTCAGCA GCTATTCAGA TAAAGGCCCA GCTCTCCTCT GCCTAAACTT
  GAACCTGTGG ATGGGTTTTA CCCTAAGGGT GGTTTTGAAT TCCTTCCTCC CTGTCTTGAG
  GGTTCATACA GCAACACTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575051	NES09070806	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27398268					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575051	NES09070806	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102830372 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	1073 bp downstream
Tssr19143	transcription start site region 19143	1440 bp downstream
Tssr19144	transcription start site region 19144	1423 bp downstream