rs27398270 SNP Detail

Summary

• ID
  rs27398270
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102829415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTCAT CAAACAGGTA
  CCTTGAATTG GGGCGATCAA GAGATTACAC CAGCTCTCTC CCTTGGGCTG GAGTCACAGG
  TCATACCCTA GAATAACCTG AAGAGTTGGG TTGCTTCATG TCTATAGCAG ATAATTTCAA
  AGCTGGGTCC TTCCCACTCT GAGAAATCTG AGACACCACC TTTCATTCCT GAGATAGCAG
  K
  GTACTTCCCC AGTTTTTATT TTGTCACCTT GCATTCAAGT GCCTTGGCCC ATATCAGTCA
  CAGCCTTTTG ATGTCCCTCT TTATAAAGGC ACCAAGTACC AAGTAGTGCA TTCTCACCAC
  CATCTGACAC GGGGGTAGCA GTCTCCTGGA TCCGCCTACA ACTTCACCTT CCTCATAACA
  CCCCAGAGAC CAGCGGCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37575053	NES09070859	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27398270					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575053	NES09070859	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102829415 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	116 bp downstream
Tssr19143	transcription start site region 19143	483 bp downstream
Tssr19144	transcription start site region 19144	466 bp downstream