rs27398271 SNP Detail

Summary

• ID
  rs27398271
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102829409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGATTTC TTTCATCAAA
  CAGGTACCTT GAATTGGGGC GATCAAGAGA TTACACCAGC TCTCTCCCTT GGGCTGGAGT
  CACAGGTCAT ACCCTAGAAT AACCTGAAGA GTTGGGTTGC TTCATGTCTA TAGCAGATAA
  TTTCAAAGCT GGGTCCTTCC CACTCTGAGA AATCTGAGAC ACCACCTTTC ATTCCTGAGA
  W
  AGCAGTGTAC TTCCCCAGTT TTTATTTTGT CACCTTGCAT TCAAGTGCCT TGGCCCATAT
  CAGTCACAGC CTTTTGATGT CCCTCTTTAT AAAGGCACCA AGTACCAAGT AGTGCATTCT
  CACCACCATC TGACACGGGG GTAGCAGTCT CCTGGATCCG CCTACAACTT CACCTTCCTC
  ATAACACCCC AGAGACCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575054	NES09070858	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27398271					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575054	NES09070858	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102829409 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	110 bp downstream
Rr561777	regulatory region 561777	900 bp distal
Rr561778	regulatory region 561778	470 bp distal
Rr561779	regulatory region 561779	261 bp distal
Rr561780	regulatory region 561780	within coordinates
Tssr19143	transcription start site region 19143	477 bp downstream
Tssr19144	transcription start site region 19144	460 bp downstream