rs27398276 SNP Detail

Summary

• ID
  rs27398276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102827817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGTCTGG ATCCCATTCA
  TTGTGCTAGA CTGGGATCTG CCTGTCACTG CCTCTCTAAT GCCAAGATTA CAAGCACACA
  CCACCATGTC CAGCTTACTT ATGTTGGCTC GAGGGATCAA GTTTTCATTT TTACAAGGAA
  GACACTCATC AAATGAGGTA TCTCTTAGCC CCAGAGCTGT ACAGTTTTAA AGCACTCACG
  Y
  TTATGGAAAA TCTAGTGAAG CCATCAGGTA AGGAAAGGGC TAGCATAAGC ATGGAGAGGA
  GCCTCTAGGA ACACAGGCAC TATTTAACTA TCCTTATTTC TGTATCTTCT CTCCTTCCTA
  GCCTCATTTT TTATTCATCA TTAAAGCATA TTGCTTTTGA GAGAGCATAC TTTTTAAATT
  CAGGAGCTCT CAACAATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37575062	NES09070847	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27398276					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575062	NES09070847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102827817 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	1112 bp upstream
Rr561777	regulatory region 561777	494 bp proximal
Rr561778	regulatory region 561778	835 bp proximal
Rr561779	regulatory region 561779	1123 bp proximal
Rr561780	regulatory region 561780	1469 bp proximal
Tssr19143	transcription start site region 19143	1105 bp upstream
Tssr19144	transcription start site region 19144	1121 bp upstream