rs27398699 SNP Detail

Summary

• ID
  rs27398699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90293237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTCAGT TGCATAGTAA
  GTTAGAGAGT GACATGAGAC CCTCTCACAA ACCTGGGTGG GACCCGTCAA GGTGGCTCCA
  TTAAGTAAGA GCAGCTGCCT GCCGCACAAG CATGAGGACT TAAGTTCAAT TCCCAGAGCC
  CAGGGTGGAA GGAAAGAACC AGTCCCCAAA GCCCTTTGAC CTCCGTACCT ATAGCGTTTG
  Y
  AATAATTACT AACTTTACAT GTGACTTTTT TTTTTGCTTG ACTTTATTTT TGTATTGTTG
  ATATGCACCA CAGCCATGAA ATGTTTTTAA GATTCTTTCT CATAAAAAGA AAAATAATAC
  TCATAAAATA AGAAATCTAT GAGTTACGCT GGCTCCCTGT AAGAAACCTC CATGTCCAGA
  CGCTTACCAG TGCTCCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37606128	NES09106169	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27398699					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37606128	NES09106169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90293237 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	within coordinates
Rr55090	regulatory region 55090	410 bp distal
Rr373523	regulatory region 373523	within coordinates
Tssr25091	transcription start site region 25091	1988 bp upstream
Tssr25092	transcription start site region 25092	214 bp downstream