rs27398700 SNP Detail

Summary

• ID
  rs27398700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90292917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTTTGG GAAGCAAAAG
  CAGGCTGATT TCTGTGAAAA GCCAGCTGGG TCTACAAAGG GCAGCCAGAG CTATACAGTG
  AAGCCTTGTT TCAAAAGCAA ATAAGAAAAT AAATAGATAA AAATAAAATG ACTCATACTT
  GACAGGGTAA GATACTCAGA ATAAACAGGT GAGAAGAAAG CAGATTATAA AACCACACAG
  R
  AACCAAGACA GCCAGGTTTG TAAATATAGA TGTCCATCTG CATCATAAAA CAGTATCAGG
  GAGCTGGCTA TGGTAGCATG TGACTCTAAT CTTAGCACCT GAGAGGCAGA GTTCAAAGCC
  AACCTCAGTT GCATAGTAAG TTAGAGAGTG ACATGAGACC CTCTCACAAA CCTGGGTGGG
  ACCCGTCAAG GTGGCTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37606129	NES09106195	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27398700					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37606129	NES09106195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90292917 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	within coordinates
Rr55090	regulatory region 55090	90 bp distal
Rr373523	regulatory region 373523	within coordinates
Tssr25089	transcription start site region 25089	1855 bp upstream
Tssr25090	transcription start site region 25090	1827 bp upstream
Tssr25091	transcription start site region 25091	1668 bp upstream
Tssr25092	transcription start site region 25092	534 bp downstream