rs27398701 SNP Detail

Summary

• ID
  rs27398701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90291070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGATTG TGACATTGTA
  TAAGGTGCCT GGGGTGAGGC TCCCTACTGT GATCCACTTC TGAGAACTGT TGGTCCTGAT
  GATGGAGCCA CTTTTAGACT CTAGAACTAA ATGGTAAGTG TATCCAGAGG CATCGTCCGT
  ATTCTGCCAC TCCAACTGCA TTTCAGTGGT GCTAATGTTG ACCACCCGGA TGTCAGTCAC
  R
  GCACTGGGGT CTAGTCAGAG AAAAGAAAGG AAAGTATTTA ATCATGATTC CAGCTTCACT
  TCAAAGTCTT TGTCAAAAGA ACCAACTCTT CATTATCCAG ATTTCCAATG AGGCCAGAGA
  CCATGCACTA GGGATCAGGG CCAGTCTGGG CTACAAAGTA AACCTGCCTC AAAAAAAAAC
  AAAAAAACAA AACAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37606130	NES09106303	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27398701					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37606130	NES09106303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90291070 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	within coordinates
Rr55090	regulatory region 55090	1307 bp proximal
Rr373523	regulatory region 373523	1112 bp upstream
Tssr18753	transcription start site region 18753	1070 bp downstream
Tssr25089	transcription start site region 25089	8 bp upstream
Tssr25090	transcription start site region 25090	9 bp downstream
Tssr25091	transcription start site region 25091	167 bp downstream