rs27398703 SNP Detail

Summary

• ID
  rs27398703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90290448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCTTCTT TTAATGTTTA
  ATTTTATCAT ATATATTCTA ATATATTGCC TCATACAGAG AGAGTGCTTC TTTTAAAATG
  TTATCATATA CCTTCCCATA CATTATCTCA TACAGAGAAA TAGTGTACTA TAATGTCCAA
  CCTCCTTTTG GAATCTGACT ATTAAAGAGG GTCAAGCACA GGATAGGCTA ACACTTCCAC
  Y
  GTCCGTCCAT CTGAAGCCTG GGGAAACATC TCAGTCACTG TCACAGAAGA GATCCTCATC
  TGAGGGGATC TCCAGCGGCA GCAAGGACAG CAACTCTCTT TATTTTTCTG AAGAGTGAAC
  AGCAGGCTCT ACAACACTCT CCACTCTCCT ATGATGCTAC TTTCTGCTTA CAAAGAGCAG
  CTGTGTTCAC ATAGCTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37606132	NES09106301	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27398703					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37606132	NES09106301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90290448 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	within coordinates
Rr55090	regulatory region 55090	1929 bp proximal
Rr373523	regulatory region 373523	1734 bp upstream
Tssr18753	transcription start site region 18753	448 bp downstream
Tssr25087	transcription start site region 25087	1915 bp upstream
Tssr25088	transcription start site region 25088	1777 bp upstream
Tssr25089	transcription start site region 25089	591 bp downstream
Tssr25090	transcription start site region 25090	631 bp downstream
Tssr25091	transcription start site region 25091	789 bp downstream