rs27399447 SNP Detail

Summary

• ID
  rs27399447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:88788262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTCATT CCAGACATTG
  AAGAAAATTC TAAATCTTTC CAAGACATGC ATGTGCATTC TAAATTACAT GTTGCCACTT
  CAACTGGTAT AGCAGAGTGT TTGGATGGGT ATTGCCAGAC ATGATAAATC AATTATGCTC
  TTCAATCCAT ACATAGAATA CAGTTTTAGG ATGCCTTTTA ACACTTCACA CCAGGAAGCC
  R
  CTGGAGAGTG AAAAAAAGCT CACACTTAAA AGATGAACTG TATCTTTTCA TAAAGCAGGT
  TAATTTCATC TCTTATAACA CAAGTAAGAC TATTTTAAAA AAAAAATATT TTGTAATTTA
  TCTCTTCAAT TCTACCTGAT TATAAACGGT TTTTTCAATG AGTTTTCTAA TTTTTATTCT
  AAACATCAAT GGAATTAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37608277	NES09109344	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27399447					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37608277	NES09109344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:88788262 () rs orientation: forward

Symbol	Name	Function Class
Or4c107	olfactory receptor family 4 subfamily C member 107	550 bp upstream