rs27399870 SNP Detail

Summary

• ID
  rs27399870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92076500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATCATA ATTAAAAAAT
  ATCTGTAGTG AGTTGTGTAT TGGTAACTCC CTGGGTGCAA TCCCAGCACT TGGGATGTTG
  AAGTGAGAGG ATGGAGCATT TATGAACTGC CTTACTATAT ATAGTAAGCC CGGTCTCAAA
  AGCCGTCAAG GTTGAGTGGA GGCTCCCAAA TCAAGTCCTG ACAAAAGTCA TGGTAGGGAG
  Y
  TGAAAGCTGT TTATATGCAT CGGTCTACAA CCCTGAGAGA ACACACACTT TTCTCATTCT
  GATTTGCTTG TTGTGTGATG TGGTATGAAT GATGAAGTGG TATCTACTGT TTGTCAGGAA
  TGCTTCTCTT TCATAGCTCT GTACCATGAC CTGATAAGAT TAGATAGGAC TTCTCAAATG
  GCTTGGTGCC TTTCTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37603100	NES09107840	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27399870					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37603100	NES09107840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92076500 () rs orientation: forward

Symbol	Name	Function Class
Gm74977	predicted gene, 74977	within coordinates
Phf21a	PHD finger protein 21A	within coordinates
Tssr18941	transcription start site region 18941	52 bp upstream