rs27399880 SNP Detail

Summary

• ID
  rs27399880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92074722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAATGTC TTTTCCTAAG
  AGCAAGGAAA ACTTTAGTTA GAAGCCTGTC ATTAGACTTT ATATCTTTTT GGCACACCTC
  TGCCTCCTGC AAACAATTAG CTCTTGGTAG GAAGCGTCCG AGACTGATTA ATACCCTAAA
  GCTGGCGATC CACCTCTCAA GTGTTTGGAG GCTGGATAGC AAACAGGATT GCTTTTTGTT
  Y
  AGAAGGAATC GGATCAGAAG GGATAGGGAC TAATAAAAGC CGAAAAGGCA ATTAACATTA
  TCTATCTTTC TACTCATGTA AATTAGATGC AGTATATAGA TAAAGATGCT TGCACTCACA
  GACTATAATT TTTCAGTAGC CATTTGTGCT CATCACTGGT TTTGTGGATT ATTTTAGAAG
  TCTACTTTTG TAACCCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37603110	NES09107827	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27399880					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37603110	NES09107827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92074722 () rs orientation: forward

Symbol	Name	Function Class
Gm74977	predicted gene, 74977	248 bp downstream
Phf21a	PHD finger protein 21A	within coordinates
Tssr18941	transcription start site region 18941	1830 bp upstream