rs27402221 SNP Detail

Summary

• ID
  rs27402221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90946400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA TAGCATCTGT CAACTTTACC
  R
  GCTGTACCGT CTCTCTAGCC TGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37605060	NES09105218	PERLEGEN	MM_PANEL2	f	SNP	G		G	G		A		A	G		A
ss146922390	ENSMUSSNP5880604	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
ss320391693	CHEV_2_90956212	CHEVERUD	SCREENING_POP	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27402221					SNP	G	A	G	G	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605060	NES09105218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90946400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	425 bp distal
Rr560650	regulatory region 560650	1884 bp distal
Rr560651	regulatory region 560651	845 bp distal
Rr560652	regulatory region 560652	782 bp distal
Rr560653	regulatory region 560653	1599 bp proximal
Spi1	Spi-1 proto-oncogene	296 bp downstream
Tssr18851	transcription start site region 18851	1772 bp downstream
Tssr18852	transcription start site region 18852	1712 bp downstream
Tssr18853	transcription start site region 18853	884 bp downstream
Tssr18854	transcription start site region 18854	842 bp downstream
Tssr18855	transcription start site region 18855	665 bp downstream
Tssr18856	transcription start site region 18856	617 bp downstream
Tssr18857	transcription start site region 18857	501 bp downstream
Tssr18858	transcription start site region 18858	458 bp downstream
Tssr18859	transcription start site region 18859	353 bp downstream
Tssr25158	transcription start site region 25158	298 bp upstream